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Constrained evolutionary algorithm for structure prediction of molecular crystals: methodology and applications

机译:分子结构预测的约束进化算法   水晶:方法和应用

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摘要

Evolutionary crystal structure prediction proved to be a powerful approachfor studying a wide range of materials. Here, we present a specificallydesigned algorithm for the prediction of the structure of complex crystalsconsisting of well-defined molecular units. The main feature of this newapproach is that each unit is treated as a whole body, which drasticallyreduces the search space and improves the efficiency, but necessitates theintroduction of new variation operators described here. To increase diversityof the population of structures, the initial population andpart($\scriptsize{\sim}$20%) of the new generations are generated using spacegroup symmetry combined with random cell parameters and random positions andorientations of molecular units. We illustrate the efficiency and reliabilityof this approach by number of tests (ice, ammonia, carbon dioxide, methane,benzene, glycine and butane-1,4-diammonium dibromide). This approach easilypredicts the crystal structure of methane \emph{A} containing 21 methanemolecules (105 atoms) per unit cell. We demonstrate that this new approach hasalso a high potential for the study of complex inorganic crystals on theexamples of a complex hydrogen storage material Mg(BH$_4$)$_2$ and elementalboron.
机译:进化晶体结构预测被证明是研究多种材料的有力方法。在这里,我们提出了一种专门设计的算法,用于预测由明确定义的分子单元组成的复杂晶体的结构。这种新方法的主要特征是将每个单元当作一个整体对待,从而大大减少了搜索空间并提高了效率,但是有必要引入此处所述的新变异算子。为了增加结构种群的多样性,使用空间组对称性结合随机细胞参数和分子单元的随机位置和方向来生成新的初始种群和部分($ \ scriptsize {\ sim} $ 20%)。我们通过大量测试(冰,氨,二氧化碳,甲烷,苯,甘氨酸和1,4-二溴化二铵丁烷)说明了这种方法的效率和可靠性。这种方法很容易预测每个单元格包含21个甲烷分子(105个原子)的甲烷\ emph {A}的晶体结构。我们证明了这种新方法在复合储氢材料Mg(BH $ _4 $)$ _ 2 $和元素硼的实例上对复合无机晶体的研究也具有很高的潜力。

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